{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"name":"python","version":"3.11.13","mimetype":"text/x-python","codemirror_mode":{"name":"ipython","version":3},"pygments_lexer":"ipython3","nbconvert_exporter":"python","file_extension":".py"},"kaggle":{"accelerator":"nvidiaTeslaT4","dataSources":[{"sourceId":1810938,"sourceType":"datasetVersion","datasetId":1075803},{"sourceId":12264896,"sourceType":"datasetVersion","datasetId":7588675},{"sourceId":12299204,"sourceType":"datasetVersion","datasetId":7752029},{"sourceId":12402373,"sourceType":"datasetVersion","datasetId":7814705}],"dockerImageVersionId":31090,"isInternetEnabled":true,"language":"python","sourceType":"notebook","isGpuEnabled":true}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"# This Python 3 environment comes with many helpful analytics libraries installed\n# It is defined by the kaggle/python Docker image: https://github.com/kaggle/docker-python\n# For example, here's several helpful packages to load\n\nimport numpy as np # linear algebra\nimport pandas as pd # data processing, CSV file I/O (e.g. pd.read_csv)\n\n# Input data files are available in the read-only \"../input/\" directory\n# For example, running this (by clicking run or pressing Shift+Enter) will list all files under the input directory\n\nimport os\nfor dirname, _, filenames in os.walk('/kaggle/input'):\n    for filename in filenames:\n        print(os.path.join(dirname, filename))\n\n# You can write up to 20GB to the current directory (/kaggle/working/) that gets preserved as output when you create a version using \"Save & Run All\" \n# You can also write temporary files to /kaggle/temp/, but they won't be saved outside of the current session","metadata":{"_uuid":"8f2839f25d086af736a60e9eeb907d3b93b6e0e5","_cell_guid":"b1076dfc-b9ad-4769-8c92-a6c4dae69d19","trusted":true,"execution":{"iopub.status.busy":"2025-07-07T23:57:08.97556Z","iopub.execute_input":"2025-07-07T23:57:08.976964Z","iopub.status.idle":"2025-07-08T00:01:29.241819Z","shell.execute_reply.started":"2025-07-07T23:57:08.97693Z","shell.execute_reply":"2025-07-08T00:01:29.241006Z"}},"outputs":[{"name":"stdout","text":"/kaggle/input/csvs-merged-data/balanced_train_6tasks.csv\n/kaggle/input/csvs-merged-data/final_train_all_classes_Nih_vinbig_corrected.csv\n/kaggle/input/csvs-merged-data/Unbalanced_test_6tasks.csv\n/kaggle/input/csvs-merged-data/final_test_all_classes_Nih_vinbig_corrected.csv\n/kaggle/input/csvs-merged-data/balanced_test_6tasks.csv\n/kaggle/input/csvs-merged-data/Unbalanced_train_6tasks.csv\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00026563_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00025583_005.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00006199_010.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00020450_007.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00017940_003.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00013503_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00011790_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00004833_016.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00011726_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00003528_004.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00006260_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00004911_010.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00010042_010.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00028041_003.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00014618_007.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00025475_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00019464_005.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00021287_006.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00024707_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00019899_006.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00017504_017.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00022170_006.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00000502_003.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00010775_008.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00025178_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00004186_007.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00018724_003.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00024190_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00001255_008.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00001304_001.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00021403_001.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00021201_082.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00022255_002.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00023486_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00020945_016.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00019460_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00013312_008.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00002066_004.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00011702_001.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00025787_004.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00003503_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00021251_008.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00026768_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00017423_004.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00004459_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00009553_005.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00016732_029.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00023211_011.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00022830_001.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00027096_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00016964_007.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00005004_001.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00007157_014.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00017236_018.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00016794_000.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00011966_014.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00000003_003.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00019894_036.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00013285_021.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00016009_039.png\n/kaggle/input/nih-data-collected-512/NIH_Data_512/00000926_002.png\n/kagg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pandas as pd\n\n# Read training and test CSV files\ntrain_df = pd.read_csv('/kaggle/input/csvs-merged-data/balanced_train_6tasks.csv')\ntest_df = pd.read_csv('/kaggle/input/csvs-merged-data/balanced_test_6tasks.csv')\n\n# Display the first few rows of each dataframe\nprint(\"Training Data:\")\nprint(train_df.head())\n\nprint(\"\\nTest Data:\")\nprint(test_df.head())\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:45.307953Z","iopub.execute_input":"2025-07-10T10:50:45.308727Z","iopub.status.idle":"2025-07-10T10:50:45.673218Z","shell.execute_reply.started":"2025-07-10T10:50:45.308699Z","shell.execute_reply":"2025-07-10T10:50:45.672538Z"}},"outputs":[{"name":"stdout","text":"Training Data:\n                               image_id      patient_id      source  \\\n0  77411e67a520f43d7e819b9c21a33e2c.png  vinbig_unknown  VinBigData   \n1                      00025189_017.png           25189         NIH   \n2                      00017262_005.png           17262         NIH   \n3                      00029075_017.png           29075         NIH   \n4                      00022789_001.png           22789         NIH   \n\n   aortic enlargement  atelectasis  calcification  cardiomegaly  \\\n0                   1            0              0             1   \n1                   0            0              0             0   \n2                   0            0              0             0   \n3                   0            1              0             0   \n4                   0            1              0             0   \n\n   consolidation  edema  emphysema  ...  mass lesions  chronic collapse  \\\n0              0      0          0  ...             0                 0   \n1              1      0          0  ...             0                 0   \n2              0      0          0  ...             1                 0   \n3              0      0          0  ...             0                 1   \n4              0      0          0  ...             0                 1   \n\n   cardiac vascular  diaphragm misc  pleural_conditions  lung_infiltrative  \\\n0                 1               0                   0                  0   \n1                 0               0                   0                  1   \n2                 0               0                   0                  0   \n3                 0               0                   1                  1   \n4                 0               0                   1                  0   \n\n   mass_lesions  chronic_collapse  cardiac_vascular  diaphragm_misc  \n0             0                 0                 1               0  \n1             0                 0                 0               0  \n2             1                 0                 0               0  \n3             0                 1                 0               0  \n4             0                 1                 0               0  \n\n[5 rows x 33 columns]\n\nTest Data:\n                               image_id      patient_id      source  \\\n0                      00027092_004.png           27092         NIH   \n1  4068af795c7cb80fec0883dab82f4fbf.png  vinbig_unknown  VinBigData   \n2  4cccd244506af875fc9d2a32ad2b4b96.png  vinbig_unknown  VinBigData   \n3                      00015892_005.png           15892         NIH   \n4                      00006142_000.png            6142         NIH   \n\n   aortic enlargement  atelectasis  calcification  cardiomegaly  \\\n0                   0            0              0             0   \n1                   0            0              0             0   \n2                   0            0              0             0   \n3                   0            0              0             0   \n4                   0            0              0             0   \n\n   consolidation  edema  emphysema  ...  mass lesions  chronic collapse  \\\n0              0      0          0  ...             0                 0   \n1              1      0          0  ...             1                 1   \n2              1      0          0  ...             1                 1   \n3              0      0          0  ...             1                 0   \n4              0      0          0  ...             1                 0   \n\n   cardiac vascular  diaphragm misc  pleural_conditions  lung_infiltrative  \\\n0                 0               0                   1                  0   \n1                 0               0                   1                  1   \n2                 0               0                   1                  1   \n3                 0               0                   1                  0   \n4                 0               0                   0                  0   \n\n   mass_lesions  chronic_collapse  cardiac_vascular  diaphragm_misc  \n0             0                 0                 0               0  \n1             1                 1                 0               0  \n2             1                 1                 0               0  \n3             1                 0                 0               0  \n4             1                 0                 0               0  \n\n[5 rows x 33 columns]\n","output_type":"stream"}],"execution_count":2},{"cell_type":"code","source":"train_df.columns","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:48.455497Z","iopub.execute_input":"2025-07-10T10:50:48.456331Z","iopub.status.idle":"2025-07-10T10:50:48.463139Z","shell.execute_reply.started":"2025-07-10T10:50:48.456295Z","shell.execute_reply":"2025-07-10T10:50:48.462363Z"}},"outputs":[{"execution_count":3,"output_type":"execute_result","data":{"text/plain":"Index(['image_id', 'patient_id', 'source', 'aortic enlargement', 'atelectasis',\n       'calcification', 'cardiomegaly', 'consolidation', 'edema', 'emphysema',\n       'fibrosis', 'hernia', 'infiltration', 'interstitial lung disease',\n       'lung opacity', 'nodule/mass', 'other lesion', 'pleural effusion',\n       'pleural thickening', 'pneumonia', 'pneumothorax', 'pleural conditions',\n       'lung infiltrative', 'mass lesions', 'chronic collapse',\n       'cardiac vascular', 'diaphragm misc', 'pleural_conditions',\n       'lung_infiltrative', 'mass_lesions', 'chronic_collapse',\n       'cardiac_vascular', 'diaphragm_misc'],\n      dtype='object')"},"metadata":{}}],"execution_count":3},{"cell_type":"code","source":"# Select specific columns\nselected_columns = ['image_id', 'patient_id', 'source'] + list(train_df.columns[-6:])\n\n# Apply the selection to both train and test DataFrames\ntrain_df_selected = train_df[selected_columns].copy()\ntest_df_selected = test_df[selected_columns].copy()\n\n# Display to verify\nprint(\"Selected Train Data:\")\nprint(train_df_selected.head())\n\nprint(\"\\nSelected Test Data:\")\nprint(test_df_selected.head())\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:50.639039Z","iopub.execute_input":"2025-07-10T10:50:50.639314Z","iopub.status.idle":"2025-07-10T10:50:50.652699Z","shell.execute_reply.started":"2025-07-10T10:50:50.639286Z","shell.execute_reply":"2025-07-10T10:50:50.651858Z"}},"outputs":[{"name":"stdout","text":"Selected Train Data:\n                               image_id      patient_id      source  \\\n0  77411e67a520f43d7e819b9c21a33e2c.png  vinbig_unknown  VinBigData   \n1                      00025189_017.png           25189         NIH   \n2                      00017262_005.png           17262         NIH   \n3                      00029075_017.png           29075         NIH   \n4                      00022789_001.png           22789         NIH   \n\n   pleural_conditions  lung_infiltrative  mass_lesions  chronic_collapse  \\\n0                   0                  0             0                 0   \n1                   0                  1             0                 0   \n2                   0                  0             1                 0   \n3                   1                  1             0                 1   \n4                   1                  0             0                 1   \n\n   cardiac_vascular  diaphragm_misc  \n0                 1               0  \n1                 0               0  \n2                 0               0  \n3                 0               0  \n4                 0               0  \n\nSelected Test Data:\n                               image_id      patient_id      source  \\\n0                      00027092_004.png           27092         NIH   \n1  4068af795c7cb80fec0883dab82f4fbf.png  vinbig_unknown  VinBigData   \n2  4cccd244506af875fc9d2a32ad2b4b96.png  vinbig_unknown  VinBigData   \n3                      00015892_005.png           15892         NIH   \n4                      00006142_000.png            6142         NIH   \n\n   pleural_conditions  lung_infiltrative  mass_lesions  chronic_collapse  \\\n0                   1                  0             0                 0   \n1                   1                  1             1                 1   \n2                   1                  1             1                 1   \n3                   1                  0             1                 0   \n4                   0                  0             1                 0   \n\n   cardiac_vascular  diaphragm_misc  \n0                 0               0  \n1                 0               0  \n2                 0               0  \n3                 0               0  \n4                 0               0  \n","output_type":"stream"}],"execution_count":4},{"cell_type":"code","source":"import os\n\n# Define all path roots\nnih_path = '/kaggle/input/nih-data-collected-512/NIH_Data_512'\nvinbig_train_path = '/kaggle/input/vinbigdata-chest-xray-resized-png-1024x1024/train'\nvinbig_test_path = '/kaggle/input/vinbigdata-chest-xray-resized-png-1024x1024/train'\n\n# Function to get image path for train\ndef get_train_image_path(row):\n    if row['source'] == 'NIH':\n        return os.path.join(nih_path, row['image_id'])\n    elif row['source'] == 'VinBigData':\n        return os.path.join(vinbig_train_path, row['image_id'])\n    return None\n\n# Function to get image path for test\ndef get_test_image_path(row):\n    if row['source'] == 'NIH':\n        return os.path.join(nih_path, row['image_id'])\n    elif row['source'] == 'VinBigData':\n        return os.path.join(vinbig_test_path, row['image_id'])\n    return None\n\n# Apply to dataframes\ntrain_df_selected['image_path'] = train_df_selected.apply(get_train_image_path, axis=1)\ntest_df_selected['image_path'] = test_df_selected.apply(get_test_image_path, axis=1)\n\n# Preview\nprint(\"Train image paths:\")\nprint(train_df_selected[['image_id', 'source', 'image_path']].head())\n\nprint(\"\\nTest image paths:\")\nprint(test_df_selected[['image_id', 'source', 'image_path']].head())\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:53.545134Z","iopub.execute_input":"2025-07-10T10:50:53.54563Z","iopub.status.idle":"2025-07-10T10:50:53.714239Z","shell.execute_reply.started":"2025-07-10T10:50:53.545603Z","shell.execute_reply":"2025-07-10T10:50:53.713443Z"}},"outputs":[{"name":"stdout","text":"Train image paths:\n                               image_id      source  \\\n0  77411e67a520f43d7e819b9c21a33e2c.png  VinBigData   \n1                      00025189_017.png         NIH   \n2                      00017262_005.png         NIH   \n3                      00029075_017.png         NIH   \n4                      00022789_001.png         NIH   \n\n                                          image_path  \n0  /kaggle/input/vinbigdata-chest-xray-resized-pn...  \n1  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n2  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n3  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n4  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n\nTest image paths:\n                               image_id      source  \\\n0                      00027092_004.png         NIH   \n1  4068af795c7cb80fec0883dab82f4fbf.png  VinBigData   \n2  4cccd244506af875fc9d2a32ad2b4b96.png  VinBigData   \n3                      00015892_005.png         NIH   \n4                      00006142_000.png         NIH   \n\n                                          image_path  \n0  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n1  /kaggle/input/vinbigdata-chest-xray-resized-pn...  \n2  /kaggle/input/vinbigdata-chest-xray-resized-pn...  \n3  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n4  /kaggle/input/nih-data-collected-512/NIH_Data_...  \n","output_type":"stream"}],"execution_count":5},{"cell_type":"code","source":"# Define the last 6 class columns\nlast_6_classes = [\n    'pleural_conditions', 'lung_infiltrative', 'mass_lesions',\n    'chronic_collapse', 'cardiac_vascular', 'diaphragm_misc'\n]\n\n# Filter the DataFrames to keep only 'image_path' + the last 6 classes\ntrain_filtered = train_df_selected[['image_path'] + last_6_classes]\ntest_filtered = test_df_selected[['image_path'] + last_6_classes]\n\n# Show samples\nprint(\"Filtered Train:\")\nprint(train_filtered.head())\n\nprint(\"\\nFiltered Test:\")\nprint(test_filtered.head())\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:55.897967Z","iopub.execute_input":"2025-07-10T10:50:55.898232Z","iopub.status.idle":"2025-07-10T10:50:55.908695Z","shell.execute_reply.started":"2025-07-10T10:50:55.898212Z","shell.execute_reply":"2025-07-10T10:50:55.907931Z"}},"outputs":[{"name":"stdout","text":"Filtered Train:\n                                          image_path  pleural_conditions  \\\n0  /kaggle/input/vinbigdata-chest-xray-resized-pn...                   0   \n1  /kaggle/input/nih-data-collected-512/NIH_Data_...                   0   \n2  /kaggle/input/nih-data-collected-512/NIH_Data_...                   0   \n3  /kaggle/input/nih-data-collected-512/NIH_Data_...                   1   \n4  /kaggle/input/nih-data-collected-512/NIH_Data_...                   1   \n\n   lung_infiltrative  mass_lesions  chronic_collapse  cardiac_vascular  \\\n0                  0             0                 0                 1   \n1                  1             0                 0                 0   \n2                  0             1                 0                 0   \n3                  1             0                 1                 0   \n4                  0             0                 1                 0   \n\n   diaphragm_misc  \n0               0  \n1               0  \n2               0  \n3               0  \n4               0  \n\nFiltered Test:\n                                          image_path  pleural_conditions  \\\n0  /kaggle/input/nih-data-collected-512/NIH_Data_...                   1   \n1  /kaggle/input/vinbigdata-chest-xray-resized-pn...                   1   \n2  /kaggle/input/vinbigdata-chest-xray-resized-pn...                   1   \n3  /kaggle/input/nih-data-collected-512/NIH_Data_...                   1   \n4  /kaggle/input/nih-data-collected-512/NIH_Data_...                   0   \n\n   lung_infiltrative  mass_lesions  chronic_collapse  cardiac_vascular  \\\n0                  0             0                 0                 0   \n1                  1             1                 1                 0   \n2                  1             1                 1                 0   \n3                  0             1                 0                 0   \n4                  0             1                 0                 0   \n\n   diaphragm_misc  \n0               0  \n1               0  \n2               0  \n3               0  \n4               0  \n","output_type":"stream"}],"execution_count":6},{"cell_type":"code","source":"from torchvision.transforms import ToTensor, Grayscale, Resize, Compose\nfrom torch.utils.data import DataLoader\nfrom PIL import Image\nimport torch\nfrom tqdm import tqdm\nfrom torch.utils.data import Dataset\n\n\nclass ChestXRayDataset(Dataset):\n    def __init__(self, dataframe, transform=None):\n        self.df = dataframe.reset_index(drop=True)\n        self.transform = transform\n        self.image_paths = self.df['image_path'].values\n        self.labels = self.df.iloc[:, 1:].values.astype('float32')  # all 6 class columns\n\n    def __len__(self):\n        return len(self.df)\n\n    def __getitem__(self, idx):\n        img_path = self.image_paths[idx]\n        try:\n            image = Image.open(img_path).convert('RGB')  # convert to RGB for CNNs\n        except Exception as e:\n            print(f\"Error loading image at {img_path}: {e}\")\n            image = Image.new('RGB', (224, 224))  # fallback empty image\n\n        if self.transform:\n            image = self.transform(image)\n\n        label = torch.tensor(self.labels[idx])\n        return image, label\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:50:58.31808Z","iopub.execute_input":"2025-07-10T10:50:58.318675Z","iopub.status.idle":"2025-07-10T10:51:01.358233Z","shell.execute_reply.started":"2025-07-10T10:50:58.318647Z","shell.execute_reply":"2025-07-10T10:51:01.357684Z"}},"outputs":[],"execution_count":7},{"cell_type":"code","source":"from torchvision import transforms\n\nimage_size = 300  # EfficientNet-B3 works well with 300x300\n\ntrain_transform = transforms.Compose([\n    transforms.Resize((image_size, image_size)),\n    transforms.Grayscale(num_output_channels=3),\n    transforms.RandomAffine(degrees=5, translate=(0.05, 0.05), \n    transforms.RandomHorizontalFlip(),\n    transforms.RandomVerticalFlip(),\n    transforms.ColorJitter(brightness=0.1, contrast=0.1),\n    transforms.ToTensor(),\n    transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])\n])\n\nval_transform = transforms.Compose([\n    transforms.Resize((image_size, image_size)),\n    transforms.Grayscale(num_output_channels=3),\n    transforms.ToTensor(),\n    transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])\n])","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T12:07:48.853875Z","iopub.execute_input":"2025-07-10T12:07:48.854146Z","iopub.status.idle":"2025-07-10T12:07:48.860421Z","shell.execute_reply.started":"2025-07-10T12:07:48.854127Z","shell.execute_reply":"2025-07-10T12:07:48.859521Z"}},"outputs":[{"traceback":["\u001b[0;36m  File \u001b[0;32m\"/tmp/ipykernel_157/2806398659.py\"\u001b[0;36m, line \u001b[0;32m14\u001b[0m\n\u001b[0;31m    ])\u001b[0m\n\u001b[0m    ^\u001b[0m\n\u001b[0;31mSyntaxError\u001b[0m\u001b[0;31m:\u001b[0m closing parenthesis ']' does not match opening parenthesis '(' on line 8\n"],"ename":"SyntaxError","evalue":"closing parenthesis ']' does not match opening parenthesis '(' on line 8 (2806398659.py, line 14)","output_type":"error"}],"execution_count":29},{"cell_type":"code","source":"# Create dataset instances\ntrain_dataset = ChestXRayDataset(train_filtered, transform=train_transform)\ntest_dataset = ChestXRayDataset(test_filtered, transform=val_transform)\n\n# Create DataLoaders\n# Create DataLoaders\ntrain_loader = DataLoader(train_dataset, batch_size=32, sampler=sampler, num_workers=4)\ntest_loader = DataLoader(test_dataset, batch_size=32, shuffle=False, num_workers=4)\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T12:07:24.830406Z","iopub.status.idle":"2025-07-10T12:07:24.830633Z","shell.execute_reply.started":"2025-07-10T12:07:24.83053Z","shell.execute_reply":"2025-07-10T12:07:24.830539Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"! pip install torch-ema","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T10:51:09.554019Z","iopub.execute_input":"2025-07-10T10:51:09.554293Z","iopub.status.idle":"2025-07-10T10:51:12.577494Z","shell.execute_reply.started":"2025-07-10T10:51:09.554271Z","shell.execute_reply":"2025-07-10T10:51:12.576768Z"}},"outputs":[{"name":"stdout","text":"Requirement already satisfied: torch-ema in /usr/local/lib/python3.11/dist-packages (0.3)\nRequirement already satisfied: torch in /usr/local/lib/python3.11/dist-packages (from torch-ema) (2.6.0+cu124)\nRequirement already satisfied: filelock in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (3.18.0)\nRequirement already satisfied: typing-extensions>=4.10.0 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (4.14.0)\nRequirement already satisfied: networkx in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (3.5)\nRequirement already satisfied: jinja2 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (3.1.6)\nRequirement already satisfied: fsspec in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (2025.5.1)\nRequirement already satisfied: nvidia-cuda-nvrtc-cu12==12.4.127 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.127)\nRequirement already satisfied: nvidia-cuda-runtime-cu12==12.4.127 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.127)\nRequirement already satisfied: nvidia-cuda-cupti-cu12==12.4.127 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.127)\nRequirement already satisfied: nvidia-cudnn-cu12==9.1.0.70 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (9.1.0.70)\nRequirement already satisfied: nvidia-cublas-cu12==12.4.5.8 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.5.8)\nRequirement already satisfied: nvidia-cufft-cu12==11.2.1.3 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (11.2.1.3)\nRequirement already satisfied: nvidia-curand-cu12==10.3.5.147 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (10.3.5.147)\nRequirement already satisfied: nvidia-cusolver-cu12==11.6.1.9 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (11.6.1.9)\nRequirement already satisfied: nvidia-cusparse-cu12==12.3.1.170 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.3.1.170)\nRequirement already satisfied: nvidia-cusparselt-cu12==0.6.2 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (0.6.2)\nRequirement already satisfied: nvidia-nccl-cu12==2.21.5 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (2.21.5)\nRequirement already satisfied: nvidia-nvtx-cu12==12.4.127 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.127)\nRequirement already satisfied: nvidia-nvjitlink-cu12==12.4.127 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (12.4.127)\nRequirement already satisfied: triton==3.2.0 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (3.2.0)\nRequirement already satisfied: sympy==1.13.1 in /usr/local/lib/python3.11/dist-packages (from torch->torch-ema) (1.13.1)\nRequirement already satisfied: mpmath<1.4,>=1.1.0 in /usr/local/lib/python3.11/dist-packages (from sympy==1.13.1->torch->torch-ema) (1.3.0)\nRequirement already satisfied: MarkupSafe>=2.0 in /usr/local/lib/python3.11/dist-packages (from jinja2->torch->torch-ema) (3.0.2)\n","output_type":"stream"}],"execution_count":10},{"cell_type":"code","source":"import torch\nimport torch.nn as nn\nfrom torchvision import models\nfrom torch.optim.lr_scheduler import ReduceLROnPlateau\n\n# Load pretrained EfficientNet-B3\nmodel = models.efficientnet_b3(pretrained=True)\n\n# Modify the classifier head\nnum_features = model.classifier[1].in_features\nmodel.classifier = nn.Sequential(\n    nn.Dropout(0.5),\n    nn.Linear(num_features, 6),\n    nn.Sigmoid()\n)\n\n# Device configuration\ndevice = torch.device('cuda' if torch.cuda.is_available() else 'cpu')\nmodel = model.to(device)","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T12:07:24.831179Z","iopub.status.idle":"2025-07-10T12:07:24.831409Z","shell.execute_reply.started":"2025-07-10T12:07:24.831294Z","shell.execute_reply":"2025-07-10T12:07:24.831308Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"import torch\nimport torch.nn as nn\nfrom torchvision import models, transforms\nfrom torch.utils.data import DataLoader\nfrom torch.optim.lr_scheduler import ReduceLROnPlateau\nfrom torch.optim.swa_utils import AveragedModel, SWALR\nimport numpy as np\nimport time\nfrom sklearn.metrics import precision_score, recall_score, f1_score\n\n# Enhanced Data Augmentation\nimage_size = 300  # EfficientNet-B3 works well with 300x300\n\ntrain_transform = transforms.Compose([\n    transforms.Resize((image_size, image_size)),\n    transforms.Grayscale(num_output_channels=3),\n    transforms.RandomAffine(degrees=5, translate=(0.05, 0.05)),\n    transforms.RandomHorizontalFlip(),\n    transforms.RandomVerticalFlip(),\n    transforms.ColorJitter(brightness=0.1, contrast=0.1),\n    transforms.ToTensor(),\n    transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])\n])\n\nval_transform = transforms.Compose([\n    transforms.Resize((image_size, image_size)),\n    transforms.Grayscale(num_output_channels=3),\n    transforms.ToTensor(),\n    transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])\n])\n\n# Create dataset instances\ntrain_dataset = ChestXRayDataset(train_filtered, transform=train_transform)\ntest_dataset = ChestXRayDataset(test_filtered, transform=val_transform)\n\n# Create DataLoaders\ntrain_loader = DataLoader(train_dataset, batch_size=32, shuffle=True, num_workers=2, pin_memory=True)\ntest_loader = DataLoader(test_dataset, batch_size=32, shuffle=False, num_workers=2, pin_memory=True)\n\n# Enhanced Model Architecture\nclass LabelSmoothingBCEWithLogits(nn.Module):\n    def __init__(self, smoothing=0.1):\n        super().__init__()\n        self.smoothing = smoothing\n        self.bce = nn.BCEWithLogitsLoss()\n    \n    def forward(self, pred, target):\n        target = target * (1 - self.smoothing) + 0.5 * self.smoothing\n        return self.bce(pred, target)\n\nmodel = models.efficientnet_b3(pretrained=True)\n\n# Modify the classifier head\nnum_features = model.classifier[1].in_features\nmodel.classifier = nn.Sequential(\n    nn.Dropout(0.5),\n    nn.Linear(num_features, 6),\n    # Removed Sigmoid because we're using BCEWithLogitsLoss\n)\n\n# Device configuration\ndevice = torch.device('cuda' if torch.cuda.is_available() else 'cpu')\nmodel = model.to(device)\n\n# Class weights and loss function\nclass_weights = torch.tensor([1.0000, 1.0003, 1.0130, 1.0036, 1.0112, 5.8025]).to(device)\ncriterion = LabelSmoothingBCEWithLogits(smoothing=0.1)\n\n# Optimizer and schedulers\noptimizer = torch.optim.AdamW(model.parameters(), lr=1e-4, weight_decay=1e-4)\nscheduler = ReduceLROnPlateau(optimizer, 'max', patience=2, factor=0.3, verbose=True)\n\n# SWA setup\nswa_model = AveragedModel(model)\nswa_start = 5  # Start SWA after 5 epochs\nswa_scheduler = SWALR(optimizer, swa_lr=1e-5)\n\n# MixUp augmentation functions\ndef mixup_data(x, y, alpha=0.4):\n    if alpha > 0:\n        lam = np.random.beta(alpha, alpha)\n    else:\n        lam = 1\n    \n    batch_size = x.size()[0]\n    index = torch.randperm(batch_size).to(device)\n    \n    mixed_x = lam * x + (1 - lam) * x[index, :]\n    y_a, y_b = y, y[index]\n    return mixed_x, y_a, y_b, lam\n\ndef mixup_criterion(criterion, pred, y_a, y_b, lam):\n    return lam * criterion(pred, y_a) + (1 - lam) * criterion(pred, y_b)\n\n# Update the calculate_metrics function\ndef calculate_metrics(y_true, y_pred):\n    # Ensure inputs are binary (0 or 1)\n    y_true = np.array(y_true).astype(int)\n    y_pred = np.array(y_pred).astype(int)\n    \n    # Handle case where all predictions are 0 for a class\n    for i in range(y_true.shape[1]):\n        if np.sum(y_pred[:, i]) == 0:\n            y_pred[0, i] = 1  # Add one prediction to avoid division by zero\n    \n    precision = precision_score(y_true, y_pred, average=None, zero_division=0)\n    recall = recall_score(y_true, y_pred, average=None, zero_division=0)\n    f1 = f1_score(y_true, y_pred, average=None, zero_division=0)\n    \n    macro_precision = precision_score(y_true, y_pred, average='macro', zero_division=0)\n    macro_recall = recall_score(y_true, y_pred, average='macro', zero_division=0)\n    macro_f1 = f1_score(y_true, y_pred, average='macro', zero_division=0)\n    \n    weighted_precision = precision_score(y_true, y_pred, average='weighted', zero_division=0)\n    weighted_recall = recall_score(y_true, y_pred, average='weighted', zero_division=0)\n    weighted_f1 = f1_score(y_true, y_pred, average='weighted', zero_division=0)\n    \n    return {\n        'precision': precision,\n        'recall': recall,\n        'f1': f1,\n        'macro_precision': macro_precision,\n        'macro_recall': macro_recall,\n        'macro_f1': macro_f1,\n        'weighted_precision': weighted_precision,\n        'weighted_recall': weighted_recall,\n        'weighted_f1': weighted_f1\n    }\n\n\ndef print_metrics(metrics, class_names, prefix=''):\n    print(f\"\\n{prefix}Metrics:\")\n    print(f\"{'Class':<15} {'Precision':<10} {'Recall':<10} {'F1':<10}\")\n    for i, name in enumerate(class_names):\n        print(f\"{name:<15} {metrics['precision'][i]:<10.4f} {metrics['recall'][i]:<10.4f} {metrics['f1'][i]:<10.4f}\")\n    \n    print(\"\\nAverages:\")\n    print(f\"{'Macro':<15} {metrics['macro_precision']:<10.4f} {metrics['macro_recall']:<10.4f} {metrics['macro_f1']:<10.4f}\")\n    print(f\"{'Weighted':<15} {metrics['weighted_precision']:<10.4f} {metrics['weighted_recall']:<10.4f} {metrics['weighted_f1']:<10.4f}\")\n\n# Update the train_epoch function\ndef train_epoch(model, loader, optimizer, criterion, epoch, mixup_alpha=0.4):\n    model.train()\n    total_loss = 0.0\n    all_preds = []\n    all_targets = []\n    \n    for inputs, labels in loader:\n        inputs = inputs.to(device)\n        labels = labels.to(device).float()\n        \n        # Apply MixUp\n        if mixup_alpha > 0:\n            inputs, labels_a, labels_b, lam = mixup_data(inputs, labels, mixup_alpha)\n            optimizer.zero_grad()\n            outputs = model(inputs)\n            loss = mixup_criterion(criterion, outputs, labels_a, labels_b, lam)\n        else:\n            optimizer.zero_grad()\n            outputs = model(inputs)\n            loss = criterion(outputs, labels)\n        \n        loss.backward()\n        \n        # Gradient clipping\n        torch.nn.utils.clip_grad_norm_(model.parameters(), max_norm=1.0)\n        \n        optimizer.step()\n        \n        total_loss += loss.item() * inputs.size(0)\n        \n        # Convert outputs to binary predictions\n        preds = (torch.sigmoid(outputs) > 0.5).float()\n        \n        # For metrics\n        if mixup_alpha > 0:\n            # For mixed samples, we need to combine the predictions\n            mixed_preds = (lam * preds + (1 - lam) * preds[torch.randperm(preds.size(0))])\n            all_preds.append(mixed_preds.cpu().numpy())\n            all_targets.append(labels_a.cpu().numpy())\n        else:\n            all_preds.append(preds.cpu().numpy())\n            all_targets.append(labels.cpu().numpy())\n    \n    avg_loss = total_loss / len(loader.dataset)\n    all_preds = np.concatenate(all_preds, axis=0)\n    all_targets = np.concatenate(all_targets, axis=0)\n    \n    return avg_loss, all_preds, all_targets\n\n# Update the evaluate_model function\ndef evaluate_model(model, data_loader, criterion, class_names, tta=False):\n    model.eval()\n    val_loss = 0.0\n    all_targets = []\n    all_preds = []\n    \n    with torch.no_grad():\n        for inputs, labels in data_loader:\n            inputs = inputs.to(device)\n            labels = labels.to(device).float()\n            \n            if tta:\n                outputs = []\n                for _ in range(4):\n                    if _ == 0:\n                        aug_input = inputs\n                    elif _ == 1:\n                        aug_input = torch.flip(inputs, [3])\n                    elif _ == 2:\n                        aug_input = torch.flip(inputs, [2])\n                    else:\n                        shift_x, shift_y = np.random.randint(-5, 5, 2)\n                        aug_input = torch.roll(inputs, shifts=(shift_x, shift_y), dims=(2, 3))\n                    \n                    outputs.append(model(aug_input))\n                outputs = torch.mean(torch.stack(outputs), dim=0)\n            else:\n                outputs = model(inputs)\n            \n            loss = criterion(outputs, labels)\n            val_loss += loss.item() * inputs.size(0)\n            \n            # Convert to binary predictions\n            preds = (torch.sigmoid(outputs) > 0.5).float()\n            all_preds.append(preds.cpu().numpy())\n            all_targets.append(labels.cpu().numpy())\n    \n    val_loss = val_loss / len(data_loader.dataset)\n    all_preds = np.concatenate(all_preds, axis=0)\n    all_targets = np.concatenate(all_targets, axis=0)\n    \n    # Ensure binary values\n    all_preds = (all_preds > 0.5).astype(int)\n    all_targets = all_targets.astype(int)\n    \n    metrics = calculate_metrics(all_targets, all_preds)\n    \n    return val_loss, metrics\n# Main training function\ndef train_model(model, train_loader, test_loader, criterion, optimizer, class_names, \n                num_epochs=25, patience=5, swa_start=5):\n    best_f1 = 0.0\n    epochs_no_improve = 0\n    best_epoch = 0\n    history = {\n        'train_loss': [], 'val_loss': [],\n        'train_metrics': [], 'val_metrics': []\n    }\n    \n    start_time = time.time()\n    \n    for epoch in range(num_epochs):\n        print(f'\\nEpoch {epoch+1}/{num_epochs}')\n        \n        # Train phase\n        train_loss, train_preds, train_targets = train_epoch(\n            model, train_loader, optimizer, criterion, epoch, mixup_alpha=0.4\n        )\n        train_metrics = calculate_metrics(train_targets, train_preds)\n        \n        # Validation phase\n        val_loss, val_metrics = evaluate_model(model, test_loader, criterion, class_names)\n        \n        # Update SWA\n        if epoch >= swa_start:\n            swa_model.update_parameters(model)\n            swa_scheduler.step()\n        \n        # Store history\n        history['train_loss'].append(train_loss)\n        history['val_loss'].append(val_loss)\n        history['train_metrics'].append(train_metrics)\n        history['val_metrics'].append(val_metrics)\n        \n        # Update learning rate\n        scheduler.step(val_metrics['macro_f1'])\n        \n        # Print epoch results\n        print(f'Train Loss: {train_loss:.4f} | Val Loss: {val_loss:.4f}')\n        print_metrics(train_metrics, class_names, 'Training')\n        print_metrics(val_metrics, class_names, 'Validation')\n        \n        # Check for improvement\n        if val_metrics['macro_f1'] > best_f1 + 0.001:  # Significant improvement\n            best_f1 = val_metrics['macro_f1']\n            best_epoch = epoch\n            epochs_no_improve = 0\n            torch.save(model.state_dict(), 'best_model.pth')\n            print(f'\\nNew best model saved with Val F1: {best_f1:.4f}')\n        else:\n            epochs_no_improve += 1\n            print(f'\\nNo improvement for {epochs_no_improve} epochs')\n            \n            if epochs_no_improve >= patience:\n                print(f'\\nEarly stopping triggered after {epoch+1} epochs!')\n                print(f'Best Val F1: {best_f1:.4f} at epoch {best_epoch+1}')\n                break\n        \n        print('-' * 80)\n    \n    # Final SWA update\n    if num_epochs > swa_start:\n        torch.optim.swa_utils.update_bn(train_loader, swa_model)\n        swa_model.cpu()\n        torch.save(swa_model.state_dict(), 'swa_model.pth')\n        swa_model.to(device)\n        \n        # Evaluate SWA model\n        print(\"\\nEvaluating SWA model:\")\n        _, swa_metrics = evaluate_model(swa_model, test_loader, criterion, class_names, tta=False)\n        print_metrics(swa_metrics, class_names, 'SWA Validation')\n    \n    training_time = time.time() - start_time\n    print(f'\\nTraining complete in {training_time//60:.0f}m {training_time%60:.0f}s')\n    print(f'Best Val F1: {best_f1:.4f} at epoch {best_epoch+1}')\n    \n    return model, history\n\n# Define your class names\nclass_names = [\n    'pleural_conditions', 'lung_infiltrative', 'mass_lesions',\n    'chronic_collapse', 'cardiac_vascular', 'diaphragm_misc'\n]\n\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T12:19:20.260281Z","iopub.execute_input":"2025-07-10T12:19:20.26071Z","iopub.status.idle":"2025-07-10T12:19:20.65243Z","shell.execute_reply.started":"2025-07-10T12:19:20.260685Z","shell.execute_reply":"2025-07-10T12:19:20.651595Z"}},"outputs":[{"name":"stderr","text":"/usr/local/lib/python3.11/dist-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.\n  warnings.warn(\n/usr/local/lib/python3.11/dist-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=EfficientNet_B3_Weights.IMAGENET1K_V1`. You can also use `weights=EfficientNet_B3_Weights.DEFAULT` to get the most up-to-date weights.\n  warnings.warn(msg)\n/usr/local/lib/python3.11/dist-packages/torch/optim/lr_scheduler.py:62: UserWarning: The verbose parameter is deprecated. Please use get_last_lr() to access the learning rate.\n  warnings.warn(\n","output_type":"stream"}],"execution_count":32},{"cell_type":"code","source":"# Start training\ntrained_model, history = train_model(\n    model, train_loader, test_loader, criterion, optimizer, \n    class_names, num_epochs=25, patience=5, swa_start=5\n)\n\n# Final evaluation with TTA\nprint(\"\\nFinal evaluation with Test Time Augmentation:\")\n_, tta_metrics = evaluate_model(model, test_loader, criterion, class_names, tta=True)\nprint_metrics(tta_metrics, class_names, 'TTA Validation')","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-10T12:19:26.034385Z","iopub.execute_input":"2025-07-10T12:19:26.034688Z","iopub.status.idle":"2025-07-10T14:19:40.30886Z","shell.execute_reply.started":"2025-07-10T12:19:26.034667Z","shell.execute_reply":"2025-07-10T14:19:40.307637Z"}},"outputs":[{"name":"stdout","text":"\nEpoch 1/25\nTrain Loss: 0.5618 | Val Loss: 0.5207\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.5389     0.3057     0.3901    \nlung_infiltrative 0.5633     0.1508     0.2379    \nmass_lesions    0.2973     0.0025     0.0050    \nchronic_collapse 0.2456     0.0025     0.0050    \ncardiac_vascular 0.5349     0.0598     0.1076    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.3633     0.0869     0.1243    \nWeighted        0.4521     0.1295     0.1817    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7010     0.4896     0.5766    \nlung_infiltrative 0.6366     0.5846     0.6095    \nmass_lesions    0.5762     0.1933     0.2895    \nchronic_collapse 0.7195     0.0766     0.1385    \ncardiac_vascular 0.8017     0.6643     0.7266    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5725     0.3347     0.3901    \nWeighted        0.6763     0.4112     0.4751    \n\nNew best model saved with Val F1: 0.3901\n--------------------------------------------------------------------------------\n\nEpoch 2/25\nTrain Loss: 0.5333 | Val Loss: 0.5058\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.5878     0.2690     0.3690    \nlung_infiltrative 0.5641     0.1705     0.2619    \nmass_lesions    0.5246     0.0074     0.0146    \nchronic_collapse 0.4662     0.0112     0.0218    \ncardiac_vascular 0.5404     0.0895     0.1536    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4472     0.0913     0.1368    \nWeighted        0.5397     0.1312     0.1933    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7225     0.5788     0.6427    \nlung_infiltrative 0.6101     0.6530     0.6309    \nmass_lesions    0.6012     0.3179     0.4159    \nchronic_collapse 0.6364     0.1818     0.2828    \ncardiac_vascular 0.7944     0.7184     0.7545    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5608     0.4083     0.4545    \nWeighted        0.6627     0.4980     0.5478    \n\nNew best model saved with Val F1: 0.4545\n--------------------------------------------------------------------------------\n\nEpoch 3/25\nTrain Loss: 0.5239 | Val Loss: 0.4954\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6017     0.2680     0.3708    \nlung_infiltrative 0.5960     0.1929     0.2914    \nmass_lesions    0.4609     0.0136     0.0265    \nchronic_collapse 0.5092     0.0250     0.0477    \ncardiac_vascular 0.5942     0.1105     0.1864    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4603     0.1017     0.1538    \nWeighted        0.5581     0.1430     0.2124    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7107     0.6301     0.6679    \nlung_infiltrative 0.6600     0.5960     0.6264    \nmass_lesions    0.7042     0.2396     0.3576    \nchronic_collapse 0.6102     0.3416     0.4380    \ncardiac_vascular 0.7966     0.7635     0.7797    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5803     0.4285     0.4783    \nWeighted        0.6832     0.5211     0.5767    \n\nNew best model saved with Val F1: 0.4783\n--------------------------------------------------------------------------------\n\nEpoch 4/25\nTrain Loss: 0.5166 | Val Loss: 0.4913\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6026     0.2605     0.3637    \nlung_infiltrative 0.5927     0.1931     0.2913    \nmass_lesions    0.4929     0.0159     0.0309    \nchronic_collapse 0.5205     0.0412     0.0764    \ncardiac_vascular 0.5944     0.1145     0.1921    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4672     0.1042     0.1591    \nWeighted        0.5642     0.1450     0.2172    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6997     0.6544     0.6763    \nlung_infiltrative 0.6408     0.6274     0.6340    \nmass_lesions    0.7526     0.2284     0.3505    \nchronic_collapse 0.6815     0.2584     0.3748    \ncardiac_vascular 0.8330     0.7473     0.7878    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.6013     0.4193     0.4706    \nWeighted        0.7008     0.5163     0.5692    \n\nNo improvement for 1 epochs\n--------------------------------------------------------------------------------\n\nEpoch 5/25\nTrain Loss: 0.5130 | Val Loss: 0.4894\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6336     0.2771     0.3855    \nlung_infiltrative 0.5927     0.1991     0.2980    \nmass_lesions    0.4286     0.0173     0.0333    \nchronic_collapse 0.4894     0.0374     0.0696    \ncardiac_vascular 0.6000     0.1139     0.1914    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4574     0.1075     0.1630    \nWeighted        0.5585     0.1503     0.2238    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7123     0.6598     0.6850    \nlung_infiltrative 0.6411     0.6521     0.6466    \nmass_lesions    0.7246     0.2732     0.3968    \nchronic_collapse 0.6638     0.3000     0.4132    \ncardiac_vascular 0.8023     0.7690     0.7853    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5907     0.4423     0.4878    \nWeighted        0.6926     0.5413     0.5885    \n\nNew best model saved with Val F1: 0.4878\n--------------------------------------------------------------------------------\n\nEpoch 6/25\nTrain Loss: 0.5066 | Val Loss: 0.4878\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6128     0.2640     0.3691    \nlung_infiltrative 0.5861     0.1977     0.2957    \nmass_lesions    0.5103     0.0229     0.0438    \nchronic_collapse 0.5047     0.0479     0.0875    \ncardiac_vascular 0.5935     0.1177     0.1964    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4679     0.1084     0.1654    \nWeighted        0.5648     0.1497     0.2243    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7075     0.6814     0.6942    \nlung_infiltrative 0.6801     0.5779     0.6249    \nmass_lesions    0.6940     0.3514     0.4666    \nchronic_collapse 0.5681     0.4818     0.5214    \ncardiac_vascular 0.8512     0.7437     0.7938    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5835     0.4727     0.5168    \nWeighted        0.6854     0.5705     0.6172    \n\nNew best model saved with Val F1: 0.5168\n--------------------------------------------------------------------------------\n\nEpoch 7/25\nTrain Loss: 0.5021 | Val Loss: 0.4858\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6262     0.2750     0.3821    \nlung_infiltrative 0.6064     0.2143     0.3166    \nmass_lesions    0.4653     0.0263     0.0498    \nchronic_collapse 0.5275     0.0553     0.1000    \ncardiac_vascular 0.6152     0.1246     0.2072    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4734     0.1159     0.1760    \nWeighted        0.5744     0.1597     0.2378    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7162     0.6157     0.6621    \nlung_infiltrative 0.6667     0.6255     0.6454    \nmass_lesions    0.7296     0.3147     0.4397    \nchronic_collapse 0.6219     0.3610     0.4569    \ncardiac_vascular 0.8260     0.7798     0.8022    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5934     0.4494     0.5011    \nWeighted        0.6963     0.5418     0.5989    \n\nNo improvement for 1 epochs\n--------------------------------------------------------------------------------\n\nEpoch 8/25\nTrain Loss: 0.4988 | Val Loss: 0.4861\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6215     0.2721     0.3785    \nlung_infiltrative 0.5985     0.2071     0.3078    \nmass_lesions    0.5603     0.0333     0.0628    \nchronic_collapse 0.5252     0.0599     0.1076    \ncardiac_vascular 0.6393     0.1270     0.2120    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4908     0.1166     0.1781    \nWeighted        0.5880     0.1594     0.2386    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7127     0.6499     0.6798    \nlung_infiltrative 0.6735     0.6217     0.6466    \nmass_lesions    0.7253     0.3163     0.4405    \nchronic_collapse 0.6558     0.2870     0.3993    \ncardiac_vascular 0.7897     0.7726     0.7810    \ndiaphragm_misc  0.5000     0.0263     0.0500    \n\nAverages:\nMacro           0.6762     0.4456     0.4995    \nWeighted        0.7024     0.5358     0.5910    \n\nNo improvement for 2 epochs\n--------------------------------------------------------------------------------\n\nEpoch 9/25\nTrain Loss: 0.4961 | Val Loss: 0.4843\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6340     0.2691     0.3778    \nlung_infiltrative 0.5896     0.2081     0.3076    \nmass_lesions    0.5210     0.0344     0.0646    \nchronic_collapse 0.5087     0.0527     0.0956    \ncardiac_vascular 0.5884     0.1248     0.2059    \ndiaphragm_misc  1.0000     0.0053     0.0105    \n\nAverages:\nMacro           0.6403     0.1157     0.1770    \nWeighted        0.5792     0.1573     0.2356    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7533     0.5662     0.6465    \nlung_infiltrative 0.6493     0.6882     0.6682    \nmass_lesions    0.6928     0.3387     0.4549    \nchronic_collapse 0.6327     0.3714     0.4681    \ncardiac_vascular 0.8327     0.7455     0.7867    \ndiaphragm_misc  0.5714     0.1053     0.1778    \n\nAverages:\nMacro           0.6887     0.4692     0.5337    \nWeighted        0.7044     0.5464     0.6044    \n\nNew best model saved with Val F1: 0.5337\n--------------------------------------------------------------------------------\n\nEpoch 10/25\nTrain Loss: 0.4929 | Val Loss: 0.4836\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6388     0.2849     0.3941    \nlung_infiltrative 0.6168     0.2174     0.3214    \nmass_lesions    0.5228     0.0344     0.0646    \nchronic_collapse 0.5186     0.0603     0.1080    \ncardiac_vascular 0.6428     0.1342     0.2220    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4900     0.1219     0.1850    \nWeighted        0.5911     0.1666     0.2480    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6885     0.7084     0.6983    \nlung_infiltrative 0.6800     0.5998     0.6374    \nmass_lesions    0.7134     0.3738     0.4906    \nchronic_collapse 0.6111     0.4571     0.5230    \ncardiac_vascular 0.8184     0.7726     0.7948    \ndiaphragm_misc  0.8000     0.1053     0.1860    \n\nAverages:\nMacro           0.7186     0.5028     0.5550    \nWeighted        0.6941     0.5868     0.6272    \n\nNew best model saved with Val F1: 0.5550\n--------------------------------------------------------------------------------\n\nEpoch 11/25\nTrain Loss: 0.4854 | Val Loss: 0.4836\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6504     0.2766     0.3881    \nlung_infiltrative 0.5946     0.2144     0.3151    \nmass_lesions    0.4483     0.0270     0.0510    \nchronic_collapse 0.5358     0.0700     0.1238    \ncardiac_vascular 0.5795     0.1253     0.2060    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4681     0.1189     0.1807    \nWeighted        0.5718     0.1630     0.2434    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7210     0.6445     0.6806    \nlung_infiltrative 0.6612     0.6530     0.6571    \nmass_lesions    0.7098     0.3594     0.4772    \nchronic_collapse 0.6192     0.3844     0.4744    \ncardiac_vascular 0.8353     0.7599     0.7958    \ndiaphragm_misc  0.6667     0.2105     0.3200    \n\nAverages:\nMacro           0.7022     0.5020     0.5675    \nWeighted        0.7001     0.5669     0.6178    \n\nNew best model saved with Val F1: 0.5675\n--------------------------------------------------------------------------------\n\nEpoch 12/25\nTrain Loss: 0.4804 | Val Loss: 0.4840\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6295     0.2825     0.3900    \nlung_infiltrative 0.5959     0.2202     0.3215    \nmass_lesions    0.4985     0.0377     0.0700    \nchronic_collapse 0.5280     0.0747     0.1309    \ncardiac_vascular 0.6034     0.1342     0.2195    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4759     0.1249     0.1887    \nWeighted        0.5758     0.1698     0.2515    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7245     0.6319     0.6750    \nlung_infiltrative 0.6474     0.6930     0.6694    \nmass_lesions    0.7437     0.3291     0.4563    \nchronic_collapse 0.6154     0.4260     0.5035    \ncardiac_vascular 0.8275     0.7708     0.7981    \ndiaphragm_misc  0.7500     0.1579     0.2609    \n\nAverages:\nMacro           0.7181     0.5014     0.5605    \nWeighted        0.7016     0.5777     0.6214    \n\nNo improvement for 1 epochs\n--------------------------------------------------------------------------------\n\nEpoch 13/25\nTrain Loss: 0.4823 | Val Loss: 0.4819\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6353     0.2853     0.3938    \nlung_infiltrative 0.6126     0.2217     0.3255    \nmass_lesions    0.4938     0.0367     0.0684    \nchronic_collapse 0.5194     0.0698     0.1231    \ncardiac_vascular 0.5899     0.1246     0.2057    \ndiaphragm_misc  0.6667     0.0106     0.0208    \n\nAverages:\nMacro           0.5863     0.1248     0.1896    \nWeighted        0.5814     0.1685     0.2500    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7148     0.6634     0.6881    \nlung_infiltrative 0.6529     0.6635     0.6582    \nmass_lesions    0.7363     0.3435     0.4684    \nchronic_collapse 0.6349     0.4065     0.4956    \ncardiac_vascular 0.8718     0.7491     0.8058    \ndiaphragm_misc  0.7143     0.2632     0.3846    \n\nAverages:\nMacro           0.7209     0.5148     0.5835    \nWeighted        0.7085     0.5753     0.6246    \n\nNew best model saved with Val F1: 0.5835\n--------------------------------------------------------------------------------\n\nEpoch 14/25\nTrain Loss: 0.4794 | Val Loss: 0.4817\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6454     0.2914     0.4016    \nlung_infiltrative 0.5967     0.2183     0.3196    \nmass_lesions    0.5653     0.0430     0.0799    \nchronic_collapse 0.5626     0.0801     0.1402    \ncardiac_vascular 0.6042     0.1282     0.2115    \ndiaphragm_misc  0.5000     0.0053     0.0105    \n\nAverages:\nMacro           0.5790     0.1277     0.1939    \nWeighted        0.5996     0.1726     0.2562    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7140     0.6607     0.6863    \nlung_infiltrative 0.6689     0.6511     0.6599    \nmass_lesions    0.6977     0.3834     0.4948    \nchronic_collapse 0.6290     0.4052     0.4929    \ncardiac_vascular 0.8037     0.7762     0.7897    \ndiaphragm_misc  0.7143     0.2632     0.3846    \n\nAverages:\nMacro           0.7046     0.5233     0.5847    \nWeighted        0.6963     0.5808     0.6259    \n\nNew best model saved with Val F1: 0.5847\n--------------------------------------------------------------------------------\n\nEpoch 15/25\nTrain Loss: 0.4763 | Val Loss: 0.4817\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6407     0.2815     0.3911    \nlung_infiltrative 0.6105     0.2252     0.3290    \nmass_lesions    0.5029     0.0400     0.0740    \nchronic_collapse 0.5499     0.0743     0.1310    \ncardiac_vascular 0.6332     0.1407     0.2302    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4895     0.1269     0.1925    \nWeighted        0.5916     0.1720     0.2559    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7205     0.6544     0.6858    \nlung_infiltrative 0.6629     0.6654     0.6641    \nmass_lesions    0.7117     0.3706     0.4874    \nchronic_collapse 0.6345     0.3922     0.4848    \ncardiac_vascular 0.8184     0.7726     0.7948    \ndiaphragm_misc  0.8333     0.2632     0.4000    \n\nAverages:\nMacro           0.7302     0.5197     0.5862    \nWeighted        0.7027     0.5779     0.6250    \n\nNew best model saved with Val F1: 0.5862\n--------------------------------------------------------------------------------\n\nEpoch 16/25\nTrain Loss: 0.4769 | Val Loss: 0.4824\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6556     0.2925     0.4046    \nlung_infiltrative 0.6136     0.2213     0.3252    \nmass_lesions    0.5419     0.0388     0.0724    \nchronic_collapse 0.5823     0.0866     0.1507    \ncardiac_vascular 0.6428     0.1402     0.2302    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5060     0.1299     0.1972    \nWeighted        0.6094     0.1760     0.2620    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7049     0.6796     0.6920    \nlung_infiltrative 0.6704     0.6264     0.6477    \nmass_lesions    0.6667     0.4281     0.5214    \nchronic_collapse 0.6243     0.4143     0.4980    \ncardiac_vascular 0.8324     0.7708     0.8004    \ndiaphragm_misc  0.6250     0.2632     0.3704    \n\nAverages:\nMacro           0.6873     0.5304     0.5883    \nWeighted        0.6917     0.5873     0.6306    \n\nNew best model saved with Val F1: 0.5883\n--------------------------------------------------------------------------------\n\nEpoch 17/25\nTrain Loss: 0.4744 | Val Loss: 0.4835\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6449     0.2885     0.3986    \nlung_infiltrative 0.6030     0.2221     0.3246    \nmass_lesions    0.5222     0.0434     0.0802    \nchronic_collapse 0.5714     0.0864     0.1501    \ncardiac_vascular 0.6170     0.1342     0.2204    \ndiaphragm_misc  0.6667     0.0106     0.0208    \n\nAverages:\nMacro           0.6042     0.1309     0.1991    \nWeighted        0.5994     0.1749     0.2599    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7048     0.6814     0.6929    \nlung_infiltrative 0.6623     0.6692     0.6657    \nmass_lesions    0.7052     0.3898     0.5021    \nchronic_collapse 0.6077     0.4286     0.5027    \ncardiac_vascular 0.8343     0.7635     0.7974    \ndiaphragm_misc  0.7692     0.2632     0.3922    \n\nAverages:\nMacro           0.7139     0.5326     0.5921    \nWeighted        0.6940     0.5946     0.6331    \n\nNew best model saved with Val F1: 0.5921\n--------------------------------------------------------------------------------\n\nEpoch 18/25\nTrain Loss: 0.4729 | Val Loss: 0.4839\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6556     0.2905     0.4026    \nlung_infiltrative 0.6121     0.2218     0.3256    \nmass_lesions    0.5518     0.0455     0.0841    \nchronic_collapse 0.5604     0.0826     0.1440    \ncardiac_vascular 0.6133     0.1384     0.2259    \ndiaphragm_misc  1.0000     0.0053     0.0105    \n\nAverages:\nMacro           0.6655     0.1307     0.1988    \nWeighted        0.6083     0.1756     0.2614    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7161     0.6562     0.6848    \nlung_infiltrative 0.6623     0.6749     0.6685    \nmass_lesions    0.7009     0.3818     0.4943    \nchronic_collapse 0.6160     0.4208     0.5000    \ncardiac_vascular 0.8068     0.7762     0.7912    \ndiaphragm_misc  0.7692     0.2632     0.3922    \n\nAverages:\nMacro           0.7119     0.5288     0.5885    \nWeighted        0.6942     0.5883     0.6292    \n\nNo improvement for 1 epochs\n--------------------------------------------------------------------------------\n\nEpoch 19/25\nTrain Loss: 0.4712 | Val Loss: 0.4813\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6581     0.2943     0.4067    \nlung_infiltrative 0.6351     0.2264     0.3338    \nmass_lesions    0.5360     0.0499     0.0913    \nchronic_collapse 0.5835     0.0842     0.1472    \ncardiac_vascular 0.6348     0.1424     0.2327    \ndiaphragm_misc  0.5000     0.0053     0.0105    \n\nAverages:\nMacro           0.5913     0.1337     0.2037    \nWeighted        0.6167     0.1793     0.2672    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7099     0.6697     0.6892    \nlung_infiltrative 0.6692     0.6654     0.6673    \nmass_lesions    0.7062     0.3802     0.4943    \nchronic_collapse 0.6325     0.4091     0.4968    \ncardiac_vascular 0.8454     0.7599     0.8004    \ndiaphragm_misc  0.8182     0.2368     0.3673    \n\nAverages:\nMacro           0.7302     0.5202     0.5859    \nWeighted        0.7038     0.5847     0.6305    \n\nNo improvement for 2 epochs\n--------------------------------------------------------------------------------\n\nEpoch 20/25\nTrain Loss: 0.4717 | Val Loss: 0.4821\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6544     0.2885     0.4004    \nlung_infiltrative 0.6184     0.2367     0.3424    \nmass_lesions    0.5119     0.0448     0.0824    \nchronic_collapse 0.5656     0.0792     0.1389    \ncardiac_vascular 0.6184     0.1429     0.2321    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4948     0.1320     0.1994    \nWeighted        0.5992     0.1786     0.2647    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7057     0.6949     0.7002    \nlung_infiltrative 0.6565     0.6759     0.6660    \nmass_lesions    0.6969     0.3930     0.5026    \nchronic_collapse 0.6269     0.4299     0.5100    \ncardiac_vascular 0.8297     0.7653     0.7962    \ndiaphragm_misc  0.7500     0.2368     0.3600    \n\nAverages:\nMacro           0.7110     0.5326     0.5892    \nWeighted        0.6942     0.6006     0.6362    \n\nNo improvement for 3 epochs\n--------------------------------------------------------------------------------\n\nEpoch 21/25\nTrain Loss: 0.4714 | Val Loss: 0.4825\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6604     0.3046     0.4169    \nlung_infiltrative 0.6189     0.2346     0.3402    \nmass_lesions    0.5923     0.0534     0.0979    \nchronic_collapse 0.5654     0.0794     0.1392    \ncardiac_vascular 0.6116     0.1431     0.2320    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.5081     0.1358     0.2044    \nWeighted        0.6114     0.1838     0.2708    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7172     0.6598     0.6873    \nlung_infiltrative 0.6670     0.6530     0.6599    \nmass_lesions    0.6903     0.3882     0.4969    \nchronic_collapse 0.6310     0.4065     0.4945    \ncardiac_vascular 0.8330     0.7653     0.7977    \ndiaphragm_misc  0.7500     0.2368     0.3600    \n\nAverages:\nMacro           0.7148     0.5183     0.5827    \nWeighted        0.7002     0.5803     0.6276    \n\nNo improvement for 4 epochs\n--------------------------------------------------------------------------------\n\nEpoch 22/25\nTrain Loss: 0.4711 | Val Loss: 0.4830\n\nTrainingMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.6518     0.2880     0.3995    \nlung_infiltrative 0.6083     0.2225     0.3258    \nmass_lesions    0.5121     0.0439     0.0809    \nchronic_collapse 0.5432     0.0850     0.1469    \ncardiac_vascular 0.6156     0.1445     0.2340    \ndiaphragm_misc  0.0000     0.0000     0.0000    \n\nAverages:\nMacro           0.4885     0.1306     0.1978    \nWeighted        0.5915     0.1762     0.2618    \n\nValidationMetrics:\nClass           Precision  Recall     F1        \npleural_conditions 0.7111     0.6670     0.6883    \nlung_infiltrative 0.6683     0.6359     0.6517    \nmass_lesions    0.7072     0.3626     0.4794    \nchronic_collapse 0.6270     0.4169     0.5008    \ncardiac_vascular 0.8353     0.7599     0.7958    \ndiaphragm_misc  0.5789     0.2895     0.3860    \n\nAverages:\nMacro           0.6880     0.5220     0.5837    \nWeighted        0.6994     0.5758     0.6243    \n\nNo improvement for 5 epochs\n\nEarly stopping triggered after 22 epochs!\nBest Val F1: 0.5921 at epoch 17\n","output_type":"stream"},{"traceback":["\u001b[0;31m---------------------------------------------------------------------------\u001b[0m","\u001b[0;31mRuntimeError\u001b[0m                              Traceback (most recent call last)","\u001b[0;32m/tmp/ipykernel_157/2269183943.py\u001b[0m in \u001b[0;36m<cell line: 0>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[0;31m# Start training\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m trained_model, history = train_model(\n\u001b[0m\u001b[1;32m      3\u001b[0m     \u001b[0mmodel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtrain_loader\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtest_loader\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcriterion\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0moptimizer\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      4\u001b[0m     \u001b[0mclass_names\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnum_epochs\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m25\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mpatience\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m5\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mswa_start\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m5\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      5\u001b[0m )\n","\u001b[0;32m/tmp/ipykernel_157/1386555436.py\u001b[0m in 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1740\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1741\u001b[0m     \u001b[0;31m# torchrec tests the code consistency with the following code\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n","\u001b[0;32m/usr/local/lib/python3.11/dist-packages/torch/nn/modules/module.py\u001b[0m in \u001b[0;36m_call_impl\u001b[0;34m(self, *args, **kwargs)\u001b[0m\n\u001b[1;32m   1748\u001b[0m                 \u001b[0;32mor\u001b[0m \u001b[0m_global_backward_pre_hooks\u001b[0m \u001b[0;32mor\u001b[0m \u001b[0m_global_backward_hooks\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1749\u001b[0m                 or _global_forward_hooks or _global_forward_pre_hooks):\n\u001b[0;32m-> 1750\u001b[0;31m             \u001b[0;32mreturn\u001b[0m \u001b[0mforward_call\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m 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\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_conv_forward\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0minput\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mweight\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbias\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    555\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    556\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n","\u001b[0;32m/usr/local/lib/python3.11/dist-packages/torch/nn/modules/conv.py\u001b[0m in \u001b[0;36m_conv_forward\u001b[0;34m(self, input, weight, bias)\u001b[0m\n\u001b[1;32m    547\u001b[0m                 \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgroups\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    548\u001b[0m             )\n\u001b[0;32m--> 549\u001b[0;31m         return F.conv2d(\n\u001b[0m\u001b[1;32m    550\u001b[0m             \u001b[0minput\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mweight\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbias\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mstride\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mpadding\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdilation\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgroups\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    551\u001b[0m         )\n","\u001b[0;31mRuntimeError\u001b[0m: Input type (torch.FloatTensor) and weight type (torch.cuda.FloatTensor) should be the same or input should be a MKLDNN tensor and weight is a dense tensor"],"ename":"RuntimeError","evalue":"Input type (torch.FloatTensor) and weight type (torch.cuda.FloatTensor) should be the same or input should be a MKLDNN tensor and weight is a dense tensor","output_type":"error"}],"execution_count":33},{"cell_type":"code","source":"torch.save(model.state_dict(), 'best_model.pth')\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-08T18:59:41.356831Z","iopub.execute_input":"2025-07-08T18:59:41.357088Z","iopub.status.idle":"2025-07-08T18:59:41.482267Z","shell.execute_reply.started":"2025-07-08T18:59:41.357071Z","shell.execute_reply":"2025-07-08T18:59:41.48145Z"}},"outputs":[],"execution_count":13},{"cell_type":"code","source":"model.load_state_dict(torch.load('best_model.pth', map_location=device))","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-08T14:32:25.153124Z","iopub.execute_input":"2025-07-08T14:32:25.153429Z","iopub.status.idle":"2025-07-08T14:32:25.3319Z","shell.execute_reply.started":"2025-07-08T14:32:25.153409Z","shell.execute_reply":"2025-07-08T14:32:25.331141Z"}},"outputs":[{"execution_count":18,"output_type":"execute_result","data":{"text/plain":"<All keys matched successfully>"},"metadata":{}}],"execution_count":18},{"cell_type":"code","source":"from sklearn.metrics import classification_report\ndef generate_classification_report(model, data_loader, class_names):\n    model.eval()\n    all_targets = []\n    all_preds = []\n    \n    with torch.no_grad():\n        for inputs, labels in data_loader:\n            inputs = inputs.to(device)\n            labels = labels.to(device).float()\n            \n            outputs = model(inputs)\n            preds = (outputs > 0.5).float()\n            \n            all_preds.append(preds.cpu().numpy())\n            all_targets.append(labels.cpu().numpy())\n    \n    all_preds = np.concatenate(all_preds, axis=0)\n    all_targets = np.concatenate(all_targets, axis=0)\n    \n    print(\"\\nClassification Report:\")\n    print(classification_report(all_targets, all_preds, target_names=class_names, zero_division=0))\n    return all_targets, all_preds\n\n\n\n# Define your class names (replace with your actual class names)\nclass_names = [\n    'pleural_conditions', 'lung_infiltrative', 'mass_lesions',\n    'chronic_collapse', 'cardiac_vascular', 'diaphragm_misc'\n]\n\n# Generate classification reports\nprint(\"\\n=== Training Set Classification Report ===\")\ntrain_targets, train_preds = generate_classification_report(model, train_loader, class_names)\n\nprint(\"\\n=== Test Set Classification Report ===\")\ntest_targets, test_preds = generate_classification_report(model, test_loader, class_names)","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-07-08T14:32:30.35257Z","iopub.execute_input":"2025-07-08T14:32:30.352863Z","iopub.status.idle":"2025-07-08T14:35:03.969996Z","shell.execute_reply.started":"2025-07-08T14:32:30.352843Z","shell.execute_reply":"2025-07-08T14:35:03.969101Z"}},"outputs":[{"name":"stdout","text":"\n=== Training Set Classification Report ===\n\nClassification Report:\n                    precision    recall  f1-score   support\n\npleural_conditions       0.96      0.93      0.94      8139\n lung_infiltrative       0.94      0.92      0.93      7435\n      mass_lesions       0.95      0.83      0.88      4329\n  chronic_collapse       0.91      0.93      0.92      5556\n  cardiac_vascular       0.95      0.99      0.97      4479\n    diaphragm_misc       0.99      0.86      0.92       189\n\n         micro avg       0.94      0.92      0.93     30127\n         macro avg       0.95      0.91      0.93     30127\n      weighted avg       0.94      0.92      0.93     30127\n       samples avg       0.95      0.93      0.93     30127\n\n\n=== Test Set Classification Report ===\n\nClassification Report:\n                    precision    recall  f1-score   support\n\npleural_conditions       0.67      0.64      0.66      1111\n lung_infiltrative       0.61      0.64      0.62      1052\n      mass_lesions       0.58      0.39      0.47       626\n  chronic_collapse       0.48      0.52      0.50       770\n  cardiac_vascular       0.73      0.79      0.76       554\n    diaphragm_misc       1.00      0.37      0.54        38\n\n         micro avg       0.61      0.60      0.61      4151\n         macro avg       0.68      0.56      0.59      4151\n      weighted avg       0.62      0.60      0.60      4151\n       samples avg       0.61      0.61      0.57      4151\n\n","output_type":"stream"}],"execution_count":19},{"cell_type":"code","source":"import matplotlib.pyplot as plt\nfrom torchvision import transforms\nfrom torchcam.methods import GradCAM  # You'll need to install torchcam: pip install torchcam\nfrom torchcam.utils import overlay_mask\n\ndef visualize_gradcam(model, test_loader, class_names, num_classes=6):\n    # Load the best model\n    model.load_state_dict(torch.load('best_model.pth'))\n    model.eval()\n    \n    # Initialize Grad-CAM\n    cam_extractor = GradCAM(model, model.features[-1])  # Using last conv layer of DenseNet\n    \n    # Find one example for each class\n    class_examples = {i: None for i in range(num_classes)}\n    found_all = False\n    \n    with torch.no_grad():\n        for inputs, labels in test_loader:\n            inputs = inputs.to(device)\n            labels = labels.cpu().numpy()\n            \n            for i in range(inputs.size(0)):\n                current_labels = np.where(labels[i] == 1)[0]\n                for cls in current_labels:\n                    if class_examples[cls] is None:\n                        class_examples[cls] = (inputs[i].unsqueeze(0), labels[i])\n                \n                # Check if we found all classes\n                if all(v is not None for v in class_examples.values()):\n                    found_all = True\n                    break\n            \n            if found_all:\n                break\n    \n    # Visualize Grad-CAM for each class\n    for cls_idx, (image_tensor, label) in class_examples.items():\n        if image_tensor is None:\n            print(f\"No example found for class {class_names[cls_idx]}\")\n            continue\n            \n        # Get model output and class activation\n        out = model(image_tensor)\n        activation_map = cam_extractor(cls_idx, out)\n        \n        # Resize and normalize the CAM\n        result = overlay_mask(\n            transforms.ToPILImage()(image_tensor.squeeze(0).cpu()),\n            transforms.ToPILImage()(activation_map[0].squeeze(0).cpu()),\n            alpha=0.5\n        )\n        \n        # Plot the results\n        plt.figure(figsize=(10, 5))\n        plt.subplot(1, 2, 1)\n        plt.imshow(transforms.ToPILImage()(image_tensor.squeeze(0).cpu()))\n        plt.title(f\"Original - {class_names[cls_idx]}\")\n        plt.axis('off')\n        \n        plt.subplot(1, 2, 2)\n        plt.imshow(result)\n        plt.title(f\"Grad-CAM - {class_names[cls_idx]}\")\n        plt.axis('off')\n        \n        plt.tight_layout()\n        plt.show()\n        \n        # Clean up\n        cam_extractor.clear_hooks()\n\n# After training, call the visualization function\nclass_names = ['Class1', 'Class2', 'Class3', 'Class4', 'Class5', 'Class6']  # Replace with your actual class names\nvisualize_gradcam(model, test_loader, class_names)","metadata":{"trusted":true},"outputs":[],"execution_count":null}]}